Installation Instructions¶

Manual Installation of Dependencies¶

The StruM package depends on the following libraries:

By far the easiest way to install all of the dependencies is with conda. With conda installed, the dependencies can be installed with:

conda install numpy scipy matplotlib cython openmp

Another method for installing the dependencies manually is using the pip command from PyPI. Then the dependencies can be installed with:

pip install numpy scipy matplotlib cython openmp

To install the StruM package, simply download the source code, navigate to that directory, and run the installation:

wget "https://github.com/pdeford/StructuralMotifs/archive/master.zip"
unzip -q master.zip
cd StructuralMotifs-master

If you only want it installed into your current directory for small scale use, use the following command:

python setup.py build_ext --inplace

If you want to install it system wide, use this command instead:

python setup.py build_ext
python setup.py install